4BQ9 Cell Adhesion date May 30, 2013
title Crystal Structure Of The Fn5 And Fn6 Domains Of Neo1, Form 1
authors C.H.Bell, E.Healey, S.Van Erp, B.Bishop, C.Tang, R.J.C.Gilbert, A.R.Aricescu, R.J.Pasterkamp, C.Siebold
compound source
Molecule: Neogenin
Chain: A, B
Fragment: Fn-Type III Domains 5 And 6, Residues 883-1083
Engineered: Yes
Other_details: N-Linked Glycosylation At N940
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_plasmid: Phlsec
symmetry Space Group: P 31 2 1
R_factor 0.205 R_Free 0.230
length a length b length c angle alpha angle beta angle gamma
103.551 103.551 110.776 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.91 Å
ligand NAG enzyme
A, B

Primary referenceStructure of the Repulsive Guidance Molecule (RGM)-Neogenin Signaling Hub., Bell CH, Healey E, van Erp S, Bishop B, Tang C, Gilbert RJ, Aricescu AR, Pasterkamp RJ, Siebold C, Science. 2013 Jun 6. PMID:23744777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (137 Kb) [Save to disk]
  • Biological Unit Coordinates (4bq9.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (4bq9.pdb2.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 4BQ9
  • CSU: Contacts of Structural Units for 4BQ9
  • Structure Factors (195 Kb)
  • Retrieve 4BQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BQ9 from S2C, [Save to disk]
  • Re-refined 4bq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BQ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4BQ9, from MSDmotif at EBI
  • Fold representative 4bq9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bq9] [4bq9_B] [4bq9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BQ9: [FN3 ] by SMART
  • Other resources with information on 4BQ9
  • Community annotation for 4BQ9 at PDBWiki (http://pdbwiki.org)

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