4BQB Cell Adhesion date May 30, 2013
title Crystal Structure Of The Fn5 And Fn6 Domains Of Neo1, Form 2
authors C.H.Bell, E.Healey, S.Van Erp, B.Bishop, C.Tang, R.J.C.Gilbert, A.R.Aricescu, R.J.Pasterkamp, C.Siebold
compound source
Molecule: Neogenin
Chain: A, B, C, D
Fragment: Fn-Type III Domains 5 And 6, Residues 883-1133
Engineered: Yes
Other_details: N-Linked Glycosylation At N940
Organism_scientific: Mus Musculus
Organism_common: House Mouse
Organism_taxid: 10090
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293t
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Phlsec
symmetry Space Group: P 1 21 1
R_factor 0.200 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.897 97.394 91.341 90.00 106.41 90.00
method X-Ray Diffractionresolution 2.70 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructure of the Repulsive Guidance Molecule (RGM)-Neogenin Signaling Hub., Bell CH, Healey E, van Erp S, Bishop B, Tang C, Gilbert RJ, Aricescu AR, Pasterkamp RJ, Siebold C, Science. 2013 Jun 6. PMID:23744777
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (274 Kb) [Save to disk]
  • Biological Unit Coordinates (4bqb.pdb1.gz) 68 Kb
  • Biological Unit Coordinates (4bqb.pdb2.gz) 67 Kb
  • Biological Unit Coordinates (4bqb.pdb3.gz) 70 Kb
  • Biological Unit Coordinates (4bqb.pdb4.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 4BQB
  • CSU: Contacts of Structural Units for 4BQB
  • Structure Factors (346 Kb)
  • Retrieve 4BQB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BQB from S2C, [Save to disk]
  • Re-refined 4bqb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4BQB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4BQB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BQB, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bqb_C] [4bqb_B] [4bqb_D] [4bqb_A] [4bqb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BQB: [FN3 ] by SMART
  • Other resources with information on 4BQB
  • Community annotation for 4BQB at PDBWiki (http://pdbwiki.org)

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