4BRZ Hydrolase date Jun 06, 2013
title Haloalkane Dehalogenase
authors H.R.Novak, C.Sayer, M.Isupov, D.Gotz, A.M.Spragg, J.A.Littlechild
compound source
Molecule: Haloalkane Dehalogenase
Chain: A, B
Engineered: Yes
 Organism_scientific: Rhodobacteraceae
Organism_taxid: 31989
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Rosetta2
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-28a
symmetry Space Group: P 1 21 1
R_factor 0.205 R_Free 0.246
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.970 75.520 64.870 90.00 92.94 90.00
method X-Ray Diffractionresolution 1.67 Å
ligand CL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBiochemical and structural characterisation of a haloalkane dehalogenase from a marine Rhodobacteraceae., Novak HR, Sayer C, Isupov MN, Gotz D, Spragg AM, Littlechild JA, FEBS Lett. 2014 May 2;588(9):1616-22. doi: 10.1016/j.febslet.2014.02.056. Epub, 2014 Mar 5. PMID:24613925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]
  • Biological Unit Coordinates (4brz.pdb1.gz) 105 Kb
  • LPC: Ligand-Protein Contacts for 4BRZ
  • CSU: Contacts of Structural Units for 4BRZ
  • Structure Factors (746 Kb)
  • Retrieve 4BRZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BRZ from S2C, [Save to disk]
  • Re-refined 4brz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BRZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BRZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BRZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4brz] [4brz_A] [4brz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4BRZ
  • Community annotation for 4BRZ at PDBWiki (http://pdbwiki.org)

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