4BY1	elongating RNA Polymerase II-Bye1 TLD complex soaked with AMPCPP	date
authors	Kinkelin, K., Wozniak, G.G., Rothbart, S.B., Lidschreiber, M., Strahl, B.D., Cramer, P.
compound		source
symmetry		R_factor R_Free 0.2062
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	3.60
ligand	APC, BRU, MG, ZN	enzyme
Gene Ontology	Chain Function Process Component A RNA-directed 5'-3' RNA polym... B C RNA-directed 5'-3' RNA polym... D RNA-directed 5'-3' RNA polym... E RNA-directed 5'-3' RNA polym... F RNA-directed 5'-3' RNA polym... G RNA-directed 5'-3' RNA polym... H RNA-directed 5'-3' RNA polym... I RNA-directed 5'-3' RNA polym... J RNA-directed 5'-3' RNA polym... DNA-directed RNA polymerase ... K RNA-directed 5'-3' RNA polym... L RNA-directed 5'-3' RNA polym... X
Primary reference	Structures of RNA polymerase II complexes with Bye1, a chromatin-binding PHF3/DIDO homologue., Kinkelin K, Wozniak GG, Rothbart SB, Lidschreiber M, Strahl BD, Cramer P, Proc Natl Acad Sci U S A. 2013 Sep 3. PMID:24003114

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1368 Kb) [Save to disk] Biological Unit Coordinates (4by1.pdb1.gz) 1353 Kb LPC: Ligand-Protein Contacts for 4BY1 CSU: Contacts of Structural Units for 4BY1 Structure Factors (1257 Kb) Retrieve 4BY1 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4BY1 from S2C, [Save to disk] Re-refined 4by1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BY1 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4BY1

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4BY1, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4by1_D] [4by1_H] [4by1_P] [4by1_L] [4by1_N] [4by1] [4by1_J] [4by1_G] [4by1_C] [4by1_B] [4by1_E] [4by1_X] [4by1_I] [4by1_A] [4by1_T] [4by1_F] [4by1_K] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4BY1: [RNA_pol_Rpb6] [RPOL4c] [RPOL8c] [RPOL9] [RPOLA_N] [RPOLCX] [RPOLD] [S1] [TFS2M] [ZnF_C2C2 ] by SMART

Other resources with information on 4BY1

Community annotation for 4BY1 at PDBWiki (http://pdbwiki.org)

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