OCA Atlas for 4BY5

4BY5

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

CA, NA

enzyme

Gene
Ontology

Chain	Function	Process	Component
B, D, A, C

Primary reference

The guanine-exchange factor Ric8a binds the calcium sensor NCS-1 to regulate synapse number and probability of release., Romero-Pozuelo J, Dason JS, Mansilla A, Banos-Mateos S, Sardina JL, Chaves-Sanjuan A, Jurado-Gomez J, Santana E, Atwood HL, Hernandez-Hernandez A, Sanchez-Barrena MJ, Ferrus A, J Cell Sci. 2014 Jul 29. pii: jcs.152603. PMID:25074811

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]

Biological Unit Coordinates (4by5.pdb1.gz) 61 Kb

Biological Unit Coordinates (4by5.pdb2.gz) 62 Kb

Biological Unit Coordinates (4by5.pdb3.gz) 61 Kb

LPC: Ligand-Protein Contacts for 4BY5

CSU: Contacts of Structural Units for 4BY5

Structure Factors (1582 Kb)

Retrieve 4BY5 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4BY5 from S2C, [Save to disk]

Re-refined 4by5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4BY5 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4by5] [4by5_A] [4by5_B] [4by5_C] [4by5_D]

SWISS-PROT database:

Domain found in 4BY5: [EFh ] by SMART

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