4BZB Crystal structure of the tetrameric dGTP-bound SAMHD1 mutant catalytic core date
authors Ji, X., Yang, H., Wu, Y., Yan, J., Mehrens, J., DeLucia, M., Hao, C., Gronenborn, A.M., Skowronski, J., Ahn, J., Xiong, Y.
compound source
symmetry
R_factor
R_Free 0.20612
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.83
ligand DGT, MG enzyme
Primary referenceMechanism of allosteric activation of SAMHD1 by dGTP., Ji X, Wu Y, Yan J, Mehrens J, Yang H, Delucia M, Hao C, Gronenborn AM, Skowronski J, Ahn J, Xiong Y, Nat Struct Mol Biol. 2013 Oct 20. doi: 10.1038/nsmb.2692. PMID:24141705
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (673 Kb) [Save to disk]
  • Biological Unit Coordinates (4bzb.pdb1.gz) 662 Kb
  • LPC: Ligand-Protein Contacts for 4BZB
  • CSU: Contacts of Structural Units for 4BZB
  • Structure Factors (2900 Kb)
  • Retrieve 4BZB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4BZB from S2C, [Save to disk]
  • Re-refined 4bzb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4BZB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4BZB
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4BZB, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4bzb_D] [4bzb_A] [4bzb_C] [4bzb_B] [4bzb]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4BZB: [HDc ] by SMART
    • Other resources with information on 4BZB
  • Community annotation for 4BZB at PDBWiki (http://pdbwiki.org)

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