4C4X Hydrolase date Sep 09, 2013
title Crystal Structure Of Human Bifunctional Epoxide Hydroxylase Complexed With C9
authors J.Pilger, A.Mazur, P.Monecke, H.Schreuder, B.Elshorst, T.Langer, A.Schiffer, I.Krimm, M.Wegstroth, D.Lee, G.Hessler, K.U.Wendt, S C.Griesinger
compound source
Molecule: Bifunctional Epoxide Hydrolase 2
Chain: A, B
Fragment: Epoxide Hydroxylase Domain Residues 230-555
Synonym: Bifunctional Epoxide Hydroxylase 2, Cytosolic Epox Hydrolase 2, Ceh, Epoxide Hydratase, Soluble Epoxide Hydrol Lipid-Phosphate Phosphatase;
Ec: 3.3.2.10, 3.1.3.76
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet16b
symmetry Space Group: P 1 21 1
R_factor 0.211 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.690 79.870 88.610 90.00 89.95 90.00
method X-Ray Diffractionresolution 2.17 Å
ligand W9M enzyme Hydrolase E.C.3.3.2.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Combination of Spin Diffusion Methods for the Determination of Protein-Ligand Complex Structural Ensembles., Pilger J, Mazur A, Monecke P, Schreuder H, Elshorst B, Bartoschek S, Langer T, Schiffer A, Krimm I, Wegstroth M, Lee D, Hessler G, Wendt KU, Becker S, Griesinger C, Angew Chem Int Ed Engl. 2015 Apr 15. doi: 10.1002/anie.201500671. PMID:25877959
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (118 Kb) [Save to disk]
  • Biological Unit Coordinates (4c4x.pdb1.gz) 110 Kb
  • LPC: Ligand-Protein Contacts for 4C4X
  • CSU: Contacts of Structural Units for 4C4X
  • Structure Factors (931 Kb)
  • Retrieve 4C4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4C4X from S2C, [Save to disk]
  • Re-refined 4c4x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4C4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4C4X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4C4X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4c4x] [4c4x_A] [4c4x_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4C4X
  • Community annotation for 4C4X at PDBWiki (http://pdbwiki.org)

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