4CBZ Notch ligand, Jagged-1, contains an N-terminal C2 domain date
authors Chilakuri, C.R., Sheppard, D., Ilagan, M.X.G., Holt, L.R., Abbott, F., Liang, S., Kopan, R., Handford, P.A., Lea, S.M.
compound source
symmetry
R_factor
R_Free 0.2459
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand FUC, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Analysis Uncovers Lipid-Binding Properties of Notch Ligands., Chillakuri CR, Sheppard D, Ilagan MX, Holt LR, Abbott F, Liang S, Kopan R, Handford PA, Lea SM, Cell Rep. 2013 Nov 13. pii: S2211-1247(13)00613-X. doi:, 10.1016/j.celrep.2013.10.029. PMID:24239355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (185 Kb) [Save to disk]
  • Biological Unit Coordinates (4cbz.pdb1.gz) 97 Kb
  • Biological Unit Coordinates (4cbz.pdb2.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 4CBZ
  • CSU: Contacts of Structural Units for 4CBZ
  • Structure Factors (409 Kb)
  • Retrieve 4CBZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CBZ from S2C, [Save to disk]
  • Re-refined 4cbz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4CBZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4CBZ
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CBZ, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cbz] [4cbz_B] [4cbz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CBZ: [DSL] [EGF_CA] [EGF_like ] by SMART
    • Other resources with information on 4CBZ
  • Community annotation for 4CBZ at PDBWiki (http://pdbwiki.org)

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