4CDC Human DPP1 in complex with (2S)-2-amino-N-((1S)-1-cyano-2-(4- phenylphenyl)ethyl)butanamide date
authors Debreczeni, J., Edman, K., Furber, M., Tiden, A., Gardiner, P., Mete, T., Ford, R., Millichip, I., Stein, L., Mather, A., Kinchin, E., Luckhurst, C., Cage, P., Sanghanee, H., Breed, J., Wissler, L.
compound source
R_Free 0.23250
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.40
ligand 6AO, CL, GOL, NAG enzyme
F, K, E, B, H, C, I, L

Primary referenceCathepsin C Inhibitors: Property Optimization and Identification of a Clinical Candidate., Furber M, Tiden AK, Gardiner P, Mete A, Ford R, Millichip I, Stein L, Mather A, Kinchin E, Luckhurst C, Barber S, Cage P, Sanganee H, Austin R, Chohan K, Beri R, Thong B, Wallace A, Oreffo V, Hutchinson R, Harper S, Debreczeni J, Breed J, Wissler L, Edman K, J Med Chem. 2014 Mar 14. PMID:24592859
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (458 Kb) [Save to disk]
  • Biological Unit Coordinates (4cdc.pdb1.gz) 116 Kb
  • Biological Unit Coordinates (4cdc.pdb2.gz) 115 Kb
  • Biological Unit Coordinates (4cdc.pdb3.gz) 115 Kb
  • Biological Unit Coordinates (4cdc.pdb4.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 4CDC
  • CSU: Contacts of Structural Units for 4CDC
  • Structure Factors (1281 Kb)
  • Retrieve 4CDC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CDC from S2C, [Save to disk]
  • Re-refined 4cdc structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CDC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CDC
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CDC, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cdc_C] [4cdc_G] [4cdc_D] [4cdc_A] [4cdc_H] [4cdc_F] [4cdc_I] [4cdc_B] [4cdc_K] [4cdc_J] [4cdc_L] [4cdc_E] [4cdc]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4CDC: [Pept_C1 ] by SMART
  • Other resources with information on 4CDC
  • Community annotation for 4CDC at PDBWiki (http://pdbwiki.org)

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