OCA Atlas for 4CE4

4CE4

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

enzyme

Gene
Ontology

Chain	Function	Process	Component
0
1
2
3
5
6
7
8
9
D
E
F
I
N
O
P
Q
R
S
T
U
V
W
X
Y
b
c
h
i
l
u

Primary reference

Architecture of the large subunit of the mammalian mitochondrial ribosome., Greber BJ, Boehringer D, Leitner A, Bieri P, Voigts-Hoffmann F, Erzberger JP, Leibundgut M, Aebersold R, Ban N, Nature. 2013 Dec 22. doi: 10.1038/nature12890. PMID:24362565

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1108 Kb) [Save to disk]

Biological Unit Coordinates (4ce4.pdb1.gz) 1090 Kb

LPC: Ligand-Protein Contacts for 4CE4

CSU: Contacts of Structural Units for 4CE4

Retrieve 4CE4 in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4CE4 from S2C, [Save to disk]

View 4CE4 in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ce4] [4ce4_0] [4ce4_1] [4ce4_2] [4ce4_3] [4ce4_5] [4ce4_6] [4ce4_7] [4ce4_8] [4ce4_9] [4ce4_A] [4ce4_B] [4ce4_D] [4ce4_E] [4ce4_F] [4ce4_I] [4ce4_N] [4ce4_O] [4ce4_P] [4ce4_Q] [4ce4_R] [4ce4_S] [4ce4_T] [4ce4_U] [4ce4_V] [4ce4_W] [4ce4_X] [4ce4_Y] [4ce4_b] [4ce4_c] [4ce4_h] [4ce4_i] [4ce4_l] [4ce4_o] [4ce4_u] [4ce4_v] [4ce4_w] [4ce4_x] [4ce4_z]

SWISS-PROT database:

Domains found in 4CE4: [KOW] [RIBOc] [Ribosomal_L14] [Ribosomal_L2] [Ribosomal_L2_C] [Tim44 ] by SMART

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