4CGS Transcription date Nov 26, 2013
title Crystal Structure Of The N-Terminal Domain Of The Pa Subunit Of Dhori Virus Polymerase
authors D.Guilligay, J.Kadlec, T.Crepin, T.Lunardi, D.Bouvier, G.Kochs, R.W.H.Ruigrok, S.Cusack
compound source
Molecule: Polymerase Subunit Pa
Chain: A, B
Fragment: N-Terminal Domain, Residues 1-171
Engineered: Yes
Organism_scientific: Dhori Virus
Organism_taxid: 11318
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: Codon Plus-Ril
Expression_system_vector_type: Plasmid
Expression_system_vector: Pet-M11
symmetry Space Group: P 1 21 1
R_factor 0.17280 R_Free 0.21964
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.910 87.450 56.130 90.00 112.98 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand CME, GOL enzyme
Primary referenceComparative structural and functional analysis of orthomyxovirus polymerase cap-snatching domains., Guilligay D, Kadlec J, Crepin T, Lunardi T, Bouvier D, Kochs G, Ruigrok RW, Cusack S, PLoS One. 2014 Jan 15;9(1):e84973. doi: 10.1371/journal.pone.0084973. eCollection, 2014 Jan 15. PMID:24454773
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (4cgs.pdb1.gz) 69 Kb
  • Biological Unit Coordinates (4cgs.pdb2.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 4CGS
  • CSU: Contacts of Structural Units for 4CGS
  • Structure Factors (978 Kb)
  • Retrieve 4CGS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CGS from S2C, [Save to disk]
  • Re-refined 4cgs structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CGS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CGS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4CGS, from MSDmotif at EBI
  • Fold representative 4cgs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cgs_A] [4cgs] [4cgs_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4CGS
  • Community annotation for 4CGS at PDBWiki (http://pdbwiki.org)

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