OCA Atlas for 4CNI

4CNI

Crystal structure of the Fab portion of Olokizumab in complex with IL- 6

date

authors

Shaw, S., Bourne, T., Meier, C., Carrington, B., Gelinas, R., Henry, A., Popplewell, A., Adams, R., Baker, T., Rapecki, S., Marshall, D., Neale, H., Lawson, A.

compound

source

symmetry

R_factor

R_Free

0.21549

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

2.20

ligand

SO4, TAM

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C		regulation of vascular endot... positive regulation of chemo... positive regulation of trans... positive regulation of immun...

Primary reference

Discovery and characterization of olokizumab: A humanized antibody targeting interleukin-6 and neutralizing gp130-signaling., Shaw S, Bourne T, Meier C, Carrington B, Gelinas R, Henry A, Popplewell A, Adams R, Baker T, Rapecki S, Marshall D, Moore A, Neale H, Lawson A, MAbs. 2014 May 1;6(3):773-81. doi: 10.4161/mabs.28612. Epub 2014 Apr 2. PMID:24670876

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]

Biological Unit Coordinates (4cni.pdb1.gz) 115 Kb

Biological Unit Coordinates (4cni.pdb2.gz) 114 Kb

LPC: Ligand-Protein Contacts for 4CNI

CSU: Contacts of Structural Units for 4CNI

Structure Factors (2444 Kb)

Retrieve 4CNI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4CNI from S2C, [Save to disk]

Re-refined 4cni structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4CNI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4CNI

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala

Dipole moment, from Dipole Server at Weizmann Institute

3D motif for 4CNI, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4cni_D] [4cni_C] [4cni_B] [4cni_A] [4cni_L] [4cni_H] [4cni]

SWISS-PROT database:

Domain organization of by SWISSPFAM

Domains found in 4CNI: [IG_like] [IGv] [IL6 ] by SMART

Other resources with information on 4CNI

Community annotation for 4CNI at PDBWiki (http://pdbwiki.org)

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