OCA Atlas for 4CVN

4CVN

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ADP, MG

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, D, C, B	adenylate kinase activity
H, F, G, E

Primary reference

RNA mimicry by the fap7 adenylate kinase in ribosome biogenesis., Loc'h J, Blaud M, Rety S, Lebaron S, Deschamps P, Bareille J, Jombart J, Robert-Paganin J, Delbos L, Chardon F, Zhang E, Charenton C, Tollervey D, Leulliot N, PLoS Biol. 2014 May 13;12(5):e1001860. doi: 10.1371/journal.pbio.1001860., eCollection 2014 May. PMID:24823650

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (402 Kb) [Save to disk]

Biological Unit Coordinates (4cvn.pdb1.gz) 96 Kb

Biological Unit Coordinates (4cvn.pdb2.gz) 101 Kb

Biological Unit Coordinates (4cvn.pdb3.gz) 101 Kb

Biological Unit Coordinates (4cvn.pdb4.gz) 102 Kb

LPC: Ligand-Protein Contacts for 4CVN

CSU: Contacts of Structural Units for 4CVN

Structure Factors (1313 Kb)

Retrieve 4CVN in mmCIF format [Save to disk]

Re-refined 4cvn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4CVN in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4cvn] [4cvn_A] [4cvn_B] [4cvn_C] [4cvn_D] [4cvn_E] [4cvn_F] [4cvn_G] [4cvn_H]

SWISS-PROT database:

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