OCA Atlas for 4CYI

4CYI

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

ATP, MG, MSE

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, C, B, D, E, A, G, H

Primary reference

Structural basis for Pan3 binding to Pan2 and its function in mRNA recruitment and deadenylation., Wolf J, Valkov E, Allen MD, Meineke B, Gordiyenko Y, McLaughlin SH, Olsen TM, Robinson CV, Bycroft M, Stewart M, Passmore LA, EMBO J. 2014 May 28. pii: e201488373. PMID:24872509

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1647 Kb) [Save to disk]

Biological Unit Coordinates (4cyi.pdb1.gz) 412 Kb

Biological Unit Coordinates (4cyi.pdb2.gz) 411 Kb

Biological Unit Coordinates (4cyi.pdb3.gz) 415 Kb

Biological Unit Coordinates (4cyi.pdb4.gz) 411 Kb

LPC: Ligand-Protein Contacts for 4CYI

CSU: Contacts of Structural Units for 4CYI

Structure Factors (8832 Kb)

Retrieve 4CYI in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4CYI from S2C, [Save to disk]

Re-refined 4cyi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4CYI in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4cyi_D] [4cyi_E] [4cyi_F] [4cyi_G] [4cyi_H] [4cyi] [4cyi_A] [4cyi_B] [4cyi_C]

SWISS-PROT database:

Domain found in 4CYI: [STYKc ] by SMART

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