4CZ2 Complex of human VARP-ANKRD1 with Rab32-GppCp. Selenomet derivative. date
authors Perez-Dorado, I., Schaefer, I.B., McCoy, A.J., Owen, D.J., Evans, P.R.
compound source
symmetry
R_factor
R_Free 0.23220
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.97
ligand GCP, MG, MSE enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


Primary referenceVARP Is Recruited on to Endosomes by Direct Interaction with Retromer, Where Together They Function in Export to the Cell Surface., Hesketh GG, Perez-Dorado I, Jackson LP, Wartosch L, Schafer IB, Gray SR, McCoy AJ, Zeldin OB, Garman EF, Harbour ME, Evans PR, Seaman MN, Luzio JP, Owen DJ, Dev Cell. 2014 May 21. pii: S1534-5807(14)00230-5. doi:, 10.1016/j.devcel.2014.04.010. PMID:24856514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (4cz2.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (4cz2.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (4cz2.pdb3.gz) 57 Kb
  • Biological Unit Coordinates (4cz2.pdb4.gz) 58 Kb
  • Biological Unit Coordinates (4cz2.pdb5.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 4CZ2
  • CSU: Contacts of Structural Units for 4CZ2
  • Structure Factors (1873 Kb)
  • Retrieve 4CZ2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4CZ2 from S2C, [Save to disk]
  • Re-refined 4cz2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4CZ2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4CZ2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4CZ2, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4cz2_E] [4cz2] [4cz2_F] [4cz2_B] [4cz2_D] [4cz2_A] [4cz2_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4CZ2: [ANK] [RAB ] by SMART
  • Other resources with information on 4CZ2
  • Community annotation for 4CZ2 at PDBWiki (http://pdbwiki.org)

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