4D11	GalNAc-T2 crystal soaked with UDP-5SGalNAc, mEA2 peptide and manganese (Lower resolution dataset)	date
authors	Lira-Navarrete, E., Iglesias-Fernandez, J., Zandberg, W.F., Companon, I., Kong, Y., Corzana, F., Pinto, B.M., Clausen, H., Peregrina, J.M., Vocadlo, D., Rovira, C., Hurtado-Guerrero, R.
compound		source
symmetry		R_factor R_Free 0.23497
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.85
ligand	BBK, MN, UDP	enzyme
Gene Ontology	Chain Function Process Component F, A, D, C, E, B
Primary reference	Substrate-Guided Front-Face Reaction Revealed by Combined Structural Snapshots and Metadynamics for the Polypeptide N-Acetylgalactosaminyltransferase 2., Lira-Navarrete E, Iglesias-Fernandez J, Zandberg WF, Companon I, Kong Y, Corzana F, Pinto BM, Clausen H, Peregrina JM, Vocadlo DJ, Rovira C, Hurtado-Guerrero R, Angew Chem Int Ed Engl. 2014 Jun 20. doi: 10.1002/anie.201402781. PMID:24954443

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (900 Kb) [Save to disk] Biological Unit Coordinates (4d11.pdb1.gz) 324 Kb Biological Unit Coordinates (4d11.pdb2.gz) 327 Kb Biological Unit Coordinates (4d11.pdb3.gz) 156 Kb Biological Unit Coordinates (4d11.pdb4.gz) 103 Kb LPC: Ligand-Protein Contacts for 4D11 CSU: Contacts of Structural Units for 4D11 Structure Factors (4673 Kb) Retrieve 4D11 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D11 from S2C, [Save to disk] Re-refined 4d11 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D11 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4D11

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4D11, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d11_B] [4d11_X] [4d11_E] [4d11_C] [4d11_O] [4d11_P] [4d11_A] [4d11_F] [4d11] [4d11_L] [4d11_Z] [4d11_D] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4D11: [RICIN ] by SMART

Other resources with information on 4D11

Community annotation for 4D11 at PDBWiki (http://pdbwiki.org)

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