OCA Atlas for 4D2T

4D2T

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

3I7

enzyme

Gene
Ontology

Chain	Function	Process	Component
D, C, A, B

Primary reference

Fragment-based discovery of type I inhibitors of maternal embryonic leucine zipper kinase., Johnson CN, Berdini V, Beke L, Bonnet P, Brehmer D, Coyle JE, Day PJ, Frederickson M, Freyne EJ, Gilissen RA, Hamlett CC, Howard S, Meerpoel L, McMenamin R, Patel S, Rees DC, Sharff A, Sommen F, Wu T, Linders JT, ACS Med Chem Lett. 2014 May 23;6(1):25-30. doi: 10.1021/ml5001245. eCollection, 2015 Jan 8. PMID:25589925

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]

Biological Unit Coordinates (4d2t.pdb1.gz) 112 Kb

Biological Unit Coordinates (4d2t.pdb2.gz) 112 Kb

Biological Unit Coordinates (4d2t.pdb3.gz) 115 Kb

Biological Unit Coordinates (4d2t.pdb4.gz) 114 Kb

LPC: Ligand-Protein Contacts for 4D2T

CSU: Contacts of Structural Units for 4D2T

Structure Factors (664 Kb)

Retrieve 4D2T in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4D2T from S2C, [Save to disk]

Re-refined 4d2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D2T in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d2t] [4d2t_A] [4d2t_B] [4d2t_C] [4d2t_D]

SWISS-PROT database:

Domain found in 4D2T: [S_TKc ] by SMART

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]