4D46 Crystal structure of E. coli FabI in complex with NAD and 5-bromo-2-(4-chloro-2-hydroxyphenoxy)benzonitrile date
authors Tareilus, M., Schiebel, J., Chang, A., Tonge, P.J., Sotriffer, C.A., Kisker, C.
compound source
symmetry
R_factor
R_Free 0.20643
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand J47, NAD enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAn Ordered Water Channel in Staphylococcus aureus FabI: Unraveling the Mechanism of Substrate Recognition and Reduction., Schiebel J, Chang A, Merget B, Bommineni GR, Yu W, Spagnuolo LA, Baxter MV, Tareilus M, Tonge PJ, Kisker C, Sotriffer CA, Biochemistry. 2015 Mar 3. PMID:25706582
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (167 Kb) [Save to disk]
  • Biological Unit Coordinates (4d46.pdb1.gz) 317 Kb
  • LPC: Ligand-Protein Contacts for 4D46
  • CSU: Contacts of Structural Units for 4D46
  • Structure Factors (877 Kb)
  • Retrieve 4D46 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D46 from S2C, [Save to disk]
  • Re-refined 4d46 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D46 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D46
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D46, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d46_A] [4d46_B] [4d46]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4D46
  • Community annotation for 4D46 at PDBWiki (http://pdbwiki.org)

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