4D7U The structure of the catalytic domain of NcLPMO9C from the filamentous fungus Neurospora crassa date
authors Borisova, A.S., Isaksen, T., Mathiesen, G., Sorlie, M., Sandgren, M., Eijsink, V.G.H., Dimarogona, M.
compound source
symmetry
R_factor
R_Free 0.1876
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.56
ligand CU, GOL enzyme
Primary referenceStructural and functional characterization of a lytic polysaccharide monooxygenase with broad substrate specificity., Borisova AS, Isaksen T, Dimarogona M, Kognole AA, Mathiesen G, Varnai A, Rohr AK, Payne CM, Sorlie M, Sandgren M, Eijsink VG, J Biol Chem. 2015 Jul 15. pii: jbc.M115.660183. PMID:26178376
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (84 Kb) [Save to disk]
  • Biological Unit Coordinates (4d7u.pdb1.gz) 41 Kb
  • Biological Unit Coordinates (4d7u.pdb2.gz) 41 Kb
  • LPC: Ligand-Protein Contacts for 4D7U
  • CSU: Contacts of Structural Units for 4D7U
  • Structure Factors (2687 Kb)
  • Retrieve 4D7U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D7U from S2C, [Save to disk]
  • Re-refined 4d7u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D7U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D7U
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d7u] [4d7u_B] [4d7u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4D7U
  • Community annotation for 4D7U at PDBWiki (http://pdbwiki.org)

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