4D7Y date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand CD, CL, MG, NI enzyme
Primary referenceAnterograde c1ql1 signaling is required in order to determine and maintain a single-winner climbing fiber in the mouse cerebellum., Kakegawa W, Mitakidis N, Miura E, Abe M, Matsuda K, Takeo YH, Kohda K, Motohashi J, Takahashi A, Nagao S, Muramatsu S, Watanabe M, Sakimura K, Aricescu AR, Yuzaki M, Neuron. 2015 Jan 21;85(2):316-29. doi: 10.1016/j.neuron.2014.12.020. PMID:25611509
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (4d7y.pdb1.gz) 125 Kb
  • LPC: Ligand-Protein Contacts for 4D7Y
  • CSU: Contacts of Structural Units for 4D7Y
  • Structure Factors (375 Kb)
  • Retrieve 4D7Y in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D7Y from S2C, [Save to disk]
  • Re-refined 4d7y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D7Y in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d7y] [4d7y_A]
  • SWISS-PROT database:
  • Domain found in 4D7Y: [C1Q ] by SMART

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