4D9Q Inhibiting Alternative Pathway Complement Activation by Targeting the Exosite on Factor D date
authors Murray, J.M., Wiesmann, C.
compound source
symmetry
R_factor
R_Free 0.2301
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.28
ligand GOL, SO4, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInhibiting alternative pathway complement activation by targeting the exosite of factor D., Katschke KJ, Wu P, Ganesan R, Kelley RF, Mathieu MA, Hass PE, Murray J, Kirchhofer D, Wiesmann C, van Lookeren Campagne M, J Biol Chem. 2012 Feb 23. PMID:22362762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (219 Kb) [Save to disk]
  • Biological Unit Coordinates (4d9q.pdb1.gz) 109 Kb
  • Biological Unit Coordinates (4d9q.pdb2.gz) 109 Kb
  • Biological Unit Coordinates (4d9q.pdb3.gz) 214 Kb
  • LPC: Ligand-Protein Contacts for 4D9Q
  • CSU: Contacts of Structural Units for 4D9Q
  • Structure Factors (4736 Kb)
  • Retrieve 4D9Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4D9Q from S2C, [Save to disk]
  • Re-refined 4d9q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4D9Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4D9Q
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4D9Q, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4d9q_B] [4d9q_E] [4d9q] [4d9q_H] [4d9q_D] [4d9q_L] [4d9q_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4D9Q: [IG_like] [IGv] [Tryp_SPc ] by SMART
    • Other resources with information on 4D9Q
  • Community annotation for 4D9Q at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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