4D9U	Rsk2 C-terminal Kinase Domain, (E)-tert-butyl 3-(4-amino-7-(3-hydroxypropyl)-5-p-tolyl-7H-pyrrolo[2,3-d]pyrimidin-6-yl)-2-cyanoacrylate	date	2012-01-12
authors	Serafimova, I.M., Pufall, M.A., Krishnan, S., Duda, K., Cohen, M.S., Maglathlin, R.L., McFarland, J.M., Miller, R.M., Frodin, M., Taunton, J.
compound		source
symmetry		R_factor R_Free 0.2756
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.40
ligand	0JH, NA	enzyme
Gene Ontology	Chain Function Process Component A
Primary reference	Reversible targeting of noncatalytic cysteines with chemically tuned electrophiles., Serafimova IM, Pufall MA, Krishnan S, Duda K, Cohen MS, Maglathlin RL, McFarland JM, Miller RM, Frodin M, Taunton J, Nat Chem Biol. 2012 Apr 1;8(5):471-6. doi: 10.1038/nchembio.925. PMID:22466421

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk] Biological Unit Coordinates (4d9u.pdb1.gz) 102 Kb Biological Unit Coordinates (4d9u.pdb2.gz) 200 Kb LPC: Ligand-Protein Contacts for 4D9U CSU: Contacts of Structural Units for 4D9U Structure Factors (99 Kb) Retrieve 4D9U in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4D9U from S2C, [Save to disk] Re-refined 4d9u structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4D9U in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4D9U

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4D9U, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4d9u] [4d9u_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 4D9U: [S_TKc ] by SMART

Other resources with information on 4D9U

Community annotation for 4D9U at PDBWiki (http://pdbwiki.org)

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Images from IMB Jena Image Library of Biological Macromolecules.

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