OCA Atlas for 4DDG

4DDG

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

Gene
Ontology

Chain	Function	Process	Component
L, C, A, B, J, K

Primary reference

OTUB1 Co-opts Lys48-Linked Ubiquitin Recognition to Suppress E2 Enzyme Function., Juang YC, Landry MC, Sanches M, Vittal V, Leung CC, Ceccarelli DF, Mateo AR, Pruneda JN, Mao DY, Szilard RK, Orlicky S, Munro M, Brzovic PS, Klevit RE, Sicheri F, Durocher D, Mol Cell. 2012 Feb 10;45(3):384-97. PMID:22325355

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1141 Kb) [Save to disk]

Biological Unit Coordinates (4ddg.pdb1.gz) 569 Kb

Biological Unit Coordinates (4ddg.pdb2.gz) 569 Kb

CSU: Contacts of Structural Units for 4DDG

Structure Factors (1012 Kb)

Retrieve 4DDG in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4DDG from S2C, [Save to disk]

Re-refined 4ddg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DDG in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ddg] [4ddg_A] [4ddg_B] [4ddg_C] [4ddg_D] [4ddg_E] [4ddg_F] [4ddg_G] [4ddg_H] [4ddg_I] [4ddg_J] [4ddg_K] [4ddg_L] [4ddg_M] [4ddg_N] [4ddg_O] [4ddg_P] [4ddg_Q] [4ddg_R] [4ddg_S] [4ddg_T] [4ddg_U] [4ddg_V] [4ddg_W] [4ddg_X]

SWISS-PROT database:

Domains found in 4DDG: [UBCc] [UBQ ] by SMART

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