4DDQ date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand K, TRS enzyme
Gene
Ontology
ChainFunctionProcessComponent
C, A, F, E, D, B


Primary referenceMapping the Spectrum of Conformational States of the DNA- and C-Gates in Bacillus subtilis Gyrase., Rudolph MG, Klostermeier D, J Mol Biol. 2013 Apr 16. pii: S0022-2836(13)00241-6. doi:, 10.1016/j.jmb.2013.04.010. PMID:23602808
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (931 Kb) [Save to disk]
  • Biological Unit Coordinates (4ddq.pdb1.gz) 309 Kb
  • Biological Unit Coordinates (4ddq.pdb2.gz) 309 Kb
  • Biological Unit Coordinates (4ddq.pdb3.gz) 309 Kb
  • LPC: Ligand-Protein Contacts for 4DDQ
  • CSU: Contacts of Structural Units for 4DDQ
  • Structure Factors (2652 Kb)
  • Retrieve 4DDQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DDQ from S2C, [Save to disk]
  • Re-refined 4ddq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DDQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ddq] [4ddq_A] [4ddq_B] [4ddq_C] [4ddq_D] [4ddq_E] [4ddq_F]
  • SWISS-PROT database:
  • Domain found in 4DDQ: [TOP4c ] by SMART

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