4DEH Crystal structure of c-Met in complex with triazolopyridinone inhibitor 3 date 2012-01-20
authors Whittington, D.A., Bellon, S.F., Long, A.M.
compound source
symmetry
R_factor
R_Free 0.2588
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand 0JK BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery and optimization of a potent and selective triazolopyridinone series of c-Met inhibitors., Bode CM, Boezio AA, Albrecht BK, Bellon SF, Berry L, Broome MA, Choquette D, Dussault I, Lewis RT, Lin MH, Rex K, Whittington DA, Yang Y, Harmange JC, Bioorg Med Chem Lett. 2012 Jun 15;22(12):4089-93. Epub 2012 Apr 25. PMID:22595176
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (4deh.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4DEH
  • CSU: Contacts of Structural Units for 4DEH
  • Structure Factors (423 Kb)
  • Retrieve 4DEH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DEH from S2C, [Save to disk]
  • Re-refined 4deh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DEH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DEH
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DEH, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4deh] [4deh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DEH: [TyrKc ] by SMART
    • Other resources with information on 4DEH
  • Community annotation for 4DEH at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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