4DEP		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	NAG	enzyme
Gene Ontology	Chain Function Process Component D, A E, B F, C
Primary reference	Structure of the activating IL-1 receptor signaling complex., Thomas C, Bazan JF, Garcia KC, Nat Struct Mol Biol. 2012 Mar 18;19(4):455-7. doi: 10.1038/nsmb.2260. PMID:22426547

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (242 Kb) [Save to disk] Biological Unit Coordinates (4dep.pdb1.gz) 116 Kb Biological Unit Coordinates (4dep.pdb2.gz) 122 Kb LPC: Ligand-Protein Contacts for 4DEP CSU: Contacts of Structural Units for 4DEP Structure Factors (336 Kb) Retrieve 4DEP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DEP from S2C, [Save to disk] Re-refined 4dep structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DEP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dep] [4dep_A] [4dep_B] [4dep_C] [4dep_D] [4dep_E] [4dep_F] SWISS-PROT database: Domains found in 4DEP: [IG] [IG_like] [IL1 ] by SMART

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