4DEV An Acetyl Xylan Esterase (Est2A) from the Rumen Bacterium Butyrivibrio proteoclasticus. date 2012-01-22
authors Till, M., Arcus, V.L.
compound source
symmetry
R_factor
R_Free 0.22424
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.00
ligand ACY, CL, GOL, PEG enzyme
Gene BPR
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Primary referenceStructure and function of an acetyl xylan esterase (est2a) from the rumen bacterium Butyrivibrio proteoclasticus., Till M, Goldstone DC, Attwood GT, Moon CD, Kelly WJ, Arcus VL, Proteins. 2013 Jan 23. doi: 10.1002/prot.24254. PMID:23345031
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]
  • Biological Unit Coordinates (4dev.pdb1.gz) 257 Kb
  • Biological Unit Coordinates (4dev.pdb2.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 4DEV
  • CSU: Contacts of Structural Units for 4DEV
  • Structure Factors (3161 Kb)
  • Retrieve 4DEV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DEV from S2C, [Save to disk]
  • Re-refined 4dev structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DEV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DEV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DEV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dev_H] [4dev_E] [4dev_A] [4dev_G] [4dev_D] [4dev_C] [4dev] [4dev_B] [4dev_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DEV
  • Community annotation for 4DEV at PDBWiki (http://pdbwiki.org)

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