4DHV Crystal structure of the Pyrococcus furiosus ferredoxin D14C variant containing the heterometallic [AgFe3S4] cluster date
authors Jakab-Simon, I.N., Christensen, H.E.M., Haahr, L.T.
compound source
symmetry
R_factor
R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.95
ligand 0KA, NCO enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • electron transfer activity


    • Primary referenceHeterometallic [AgFe(3)S (4)] ferredoxin variants: synthesis, characterization, and the first crystal structure of an engineered heterometallic iron-sulfur protein., Martic M, Jakab-Simon IN, Haahr LT, Hagen WR, Christensen HE, J Biol Inorg Chem. 2013 Feb;18(2):261-76. doi: 10.1007/s00775-012-0971-3. Epub, 2013 Jan 8. PMID:23296387
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (4dhv.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 4DHV
  • CSU: Contacts of Structural Units for 4DHV
  • Structure Factors (134 Kb)
  • Retrieve 4DHV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DHV from S2C, [Save to disk]
  • Re-refined 4dhv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DHV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DHV
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DHV, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dhv_A] [4dhv_B] [4dhv]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DHV
  • Community annotation for 4DHV at PDBWiki (http://pdbwiki.org)
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  • Images from IMB Jena Image Library of Biological Macromolecules.

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