4DJF Crystal structure of folate-bound corrinoid iron-sulfur protein (CFeSP) in complex with its methyltransferase (MeTr), co-crystallized with folate and Ti(III) citrate reductant date 2012-02-01
authors Kung, Y., Drennan, C.L.
compound source
symmetry
R_factor
R_Free 0.3082
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.03
ligand C2F, CA, COB, SF4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


C, E


F, D


Primary referenceVisualizing molecular juggling within a B(12)-dependent methyltransferase complex., Kung Y, Ando N, Doukov TI, Blasiak LC, Bender G, Seravalli J, Ragsdale SW, Drennan CL, Nature. 2012 Mar 14. doi: 10.1038/nature10916. PMID:22419154
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (296 Kb) [Save to disk]
  • Biological Unit Coordinates (4djf.pdb1.gz) 288 Kb
  • LPC: Ligand-Protein Contacts for 4DJF
  • CSU: Contacts of Structural Units for 4DJF
  • Structure Factors (711 Kb)
  • Retrieve 4DJF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJF from S2C, [Save to disk]
  • Re-refined 4djf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DJF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DJF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DJF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4djf_E] [4djf_C] [4djf_B] [4djf] [4djf_D] [4djf_A] [4djf_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DJF
  • Community annotation for 4DJF at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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