4DJI Transport Protein date Feb 02, 2012
title Structure Of Glutamate-Gaba Antiporter Gadc
authors D.Ma, P.L.Lu, C.Y.Yan, C.Fan, P.Yin, J.W.Wang, Y.G.Shi
compound source
Molecule: Probable Glutamategamma-Aminobutyrate Antiporter
Chain: A, B
Synonym: Gadc, Extreme Acid Sensitivity Protein
Engineered: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 83333
Strain: K12
Gene: Gadc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.310 R_Free 0.328
length a length b length c angle alpha angle beta angle gamma
77.618 105.415 188.617 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.19 Å
A, B

Primary referenceStructure and mechanism of a glutamate-GABA antiporter., Ma D, Lu P, Yan C, Fan C, Yin P, Wang J, Shi Y, Nature. 2012 Mar 11;483(7391):632-6. doi: 10.1038/nature10917. PMID:22407317
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (321 Kb) [Save to disk]
  • Biological Unit Coordinates (4dji.pdb1.gz) 161 Kb
  • Biological Unit Coordinates (4dji.pdb2.gz) 156 Kb
  • Biological Unit Coordinates (4dji.pdb3.gz) 315 Kb
  • CSU: Contacts of Structural Units for 4DJI
  • Structure Factors (300 Kb)
  • Retrieve 4DJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJI from S2C, [Save to disk]
  • Re-refined 4dji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DJI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 4DJI, from MSDmotif at EBI
  • Fold representative 4dji from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dji_A] [4dji] [4dji_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 4DJI
  • Community annotation for 4DJI at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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