4DJW Structure of BACE Bound to 2-imino-3-methyl-5-phenyl-5-(3-(pyridin-3-yl)phenyl)imidazolidin-4-one date 2012-02-02
authors Strickland, C., Cumming, J.
compound source
symmetry
R_factor
R_Free 0.2011
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand 0KP, TLA BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure based design of iminohydantoin BACE1 inhibitors: Identification of an orally available, centrally active BACE1 inhibitor., Cumming JN, Smith EM, Wang L, Misiaszek J, Durkin J, Pan J, Iserloh U, Wu Y, Zhu Z, Strickland C, Voigt J, Chen X, Kennedy ME, Kuvelkar R, Hyde LA, Cox K, Favreau L, Czarniecki MF, Greenlee WJ, McKittrick BA, Parker EM, Stamford AW, Bioorg Med Chem Lett. 2012 Apr 1;22(7):2444-9. Epub 2012 Feb 16. PMID:22390835
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (4djw.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (4djw.pdb2.gz) 135 Kb
  • LPC: Ligand-Protein Contacts for 4DJW
  • CSU: Contacts of Structural Units for 4DJW
  • Structure Factors (1434 Kb)
  • Retrieve 4DJW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DJW from S2C, [Save to disk]
  • Re-refined 4djw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DJW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DJW
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DJW, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4djw] [4djw_B] [4djw_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DJW
  • Community annotation for 4DJW at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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