4DOR Human Nuclear Receptor Liver Receptor Homologue-1, LRH-1, in its apo State Bound to a Fragment of Human SHP Box1 date
authors Musille, P.M., Ortlund, E.A.
compound source
symmetry
R_factor
R_Free 0.2196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand EPH enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceAntidiabetic phospholipid-nuclear receptor complex reveals the mechanism for phospholipid-driven gene regulation., Musille PM, Pathak MC, Lauer JL, Hudson WH, Griffin PR, Ortlund EA, Nat Struct Mol Biol. 2012 Apr 15;19(5):532-7. doi: 10.1038/nsmb.2279. PMID:22504882
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (86 Kb) [Save to disk]
  • Biological Unit Coordinates (4dor.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (4dor.pdb2.gz) 39 Kb
  • Biological Unit Coordinates (4dor.pdb3.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 4DOR
  • CSU: Contacts of Structural Units for 4DOR
  • Structure Factors (1314 Kb)
  • Retrieve 4DOR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DOR from S2C, [Save to disk]
  • Re-refined 4dor structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DOR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DOR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DOR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dor] [4dor_B] [4dor_A] [4dor_C] [4dor_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DOR: [HOLI ] by SMART
    • Other resources with information on 4DOR
  • Community annotation for 4DOR at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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