4DPL Structure of malonyl-coenzyme A reductase from crenarchaeota in complex with NadP date
authors Demmer, U., Warkentin, E., Srivastava, A., Kockelkorn, D., Fuchs, G., Ermler, U.
compound source
symmetry
R_factor
R_Free 0.19411
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.90
ligand NAP, UNL enzyme
Gene STK
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural basis for a bispecific NADP+ and CoA binding site in an archaeal malonyl-coenzyme A reductase., Demmer U, Warkentin E, Srivastava A, Kockelkorn D, Poetter M, Marx A, Fuchs G, Ermler U, J Biol Chem. 2013 Jan 16. PMID:23325803
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (479 Kb) [Save to disk]
  • Biological Unit Coordinates (4dpl.pdb1.gz) 472 Kb
  • LPC: Ligand-Protein Contacts for 4DPL
  • CSU: Contacts of Structural Units for 4DPL
  • Structure Factors (1923 Kb)
  • Retrieve 4DPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DPL from S2C, [Save to disk]
  • Re-refined 4dpl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DPL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DPL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dpl] [4dpl_B] [4dpl_D] [4dpl_C] [4dpl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DPL: [Semialdhyde_dh ] by SMART
    • Other resources with information on 4DPL
  • Community annotation for 4DPL at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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