4DQY Structure of Human PARP-1 bound to a DNA double strand break date 2012-02-16
authors Langelier, M.F., Pascal, J.M.
compound source
symmetry
R_factor
R_Free 0.30414
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.25
ligand EDO, ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


F, C


Primary referenceStructural basis for DNA damage-dependent poly(ADP-ribosyl)ation by human PARP-1., Langelier MF, Planck JL, Roy S, Pascal JM, Science. 2012 May 11;336(6082):728-32. PMID:22582261
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (516 Kb) [Save to disk]
  • Biological Unit Coordinates (4dqy.pdb1.gz) 278 Kb
  • Biological Unit Coordinates (4dqy.pdb2.gz) 278 Kb
  • LPC: Ligand-Protein Contacts for 4DQY
  • CSU: Contacts of Structural Units for 4DQY
  • Structure Factors (1701 Kb)
  • Retrieve 4DQY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DQY from S2C, [Save to disk]
  • Re-refined 4dqy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DQY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DQY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DQY, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dqy_E] [4dqy_D] [4dqy_N] [4dqy_A] [4dqy] [4dqy_M] [4dqy_C] [4dqy_B] [4dqy_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DQY: [PADR1] [WGR] [zf-PARP ] by SMART
  • Other resources with information on 4DQY
  • Community annotation for 4DQY at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science