4DRH Co-crystal structure of the PPIase domain of FKBP51, Rapamycin and the FRB fragment of mTOR at low pH date 2012-02-17
authors Maerz, A.M., Bracher, A., Hausch, F.
compound source
symmetry
R_factor
R_Free 0.2259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand RAP, SO4 BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D


E, B


Primary referenceLarge FK506-binding Proteins Shape the Pharmacology of Rapamycin., Marz AM, Fabian AK, Kozany C, Bracher A, Hausch F, Mol Cell Biol. 2013 Jan 28. PMID:23358420
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (4drh.pdb1.gz) 80 Kb
  • Biological Unit Coordinates (4drh.pdb2.gz) 78 Kb
  • LPC: Ligand-Protein Contacts for 4DRH
  • CSU: Contacts of Structural Units for 4DRH
  • Structure Factors (413 Kb)
  • Retrieve 4DRH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRH from S2C, [Save to disk]
  • Re-refined 4drh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DRH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DRH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DRH, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drh_D] [4drh_A] [4drh_E] [4drh] [4drh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4DRH: [Rapamycin_bind ] by SMART
  • Other resources with information on 4DRH
  • Community annotation for 4DRH at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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