4DRM EVALUATION OF SYNTHETIC FK506 ANALOGS AS LIGANDS FOR FKBP51 AND FKBP52: COMPLEX OF FKBP51 WITH {3-[(1R)-3-(3,4-dimethoxyphenyl)-1-({[(2S)-1-{[(1S,2R)-2-ethyl-1-hydroxycyclohexyl](oxo)acetyl}piperidin-2-yl]carbonyl}oxy)propyl]phenoxy}acetic acid date 2012-02-17
authors Gopalakrishnan, R., Kozany, C., Gaali, S., Kress, C., Hoogeland, B., Bracher, A., Hausch, F.
compound source
symmetry
R_factor
R_Free 0.2082
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.48
ligand 0MC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceEvaluation of Synthetic FK506 Analogues as Ligands for the FK506-Binding Proteins 51 and 52., Gopalakrishnan R, Kozany C, Gaali S, Kress C, Hoogeland B, Bracher A, Hausch F, J Med Chem. 2012 May 10;55(9):4114-22. Epub 2012 Apr 19. PMID:22455444
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (51 Kb) [Save to disk]
  • Biological Unit Coordinates (4drm.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 4DRM
  • CSU: Contacts of Structural Units for 4DRM
  • Structure Factors (311 Kb)
  • Retrieve 4DRM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DRM from S2C, [Save to disk]
  • Re-refined 4drm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DRM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DRM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DRM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4drm] [4drm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DRM
  • Community annotation for 4DRM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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