4DUM Co-crystal structure of eIF4E with inhibitor date 2012-02-22
authors Min, X., Johnstone, S., Walker, N., Wang, Z.
compound source
symmetry
R_factor
R_Free 0.27110
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.95
ligand EDO, HLI BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided design, synthesis and evaluation of guanine-derived inhibitors of the eIF4E mRNA-cap interaction., Chen X, Kopecky D, Mihalic J, Jeffries S, Min X, Heath J, Deignan J, Sujen L, Fu Z, Guimaraes C, Li S, Johnstone S, Xu H, Cardozo M, Shen W, Walker N, Kayser F, Wang Z, J Med Chem. 2012 Mar 29. PMID:22458568
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (4dum.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 4DUM
  • CSU: Contacts of Structural Units for 4DUM
  • Structure Factors (210 Kb)
  • Retrieve 4DUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DUM from S2C, [Save to disk]
  • Re-refined 4dum structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DUM
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DUM, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dum] [4dum_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DUM
  • Community annotation for 4DUM at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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