4DUR	The X-ray Crystal Structure of Full-Length type II Human Plasminogen	date
authors	Law, R.H.P., Caradoc-Davies, T., Whisstock, J.C.
compound		source
symmetry		R_factor R_Free 0.2155
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution	2.45
ligand	ACT, BCT, CL, GAL, K, NAG, SIA	enzyme
Gene Ontology	Chain Function Process Component A, B
Primary reference	The X-ray crystal structure of full-length human plasminogen., Law RH, Caradoc-Davies T, Cowieson N, Horvath AJ, Quek AJ, Encarnacao JA, Steer D, Cowan A, Zhang Q, Lu BG, Pike RN, Smith AI, Coughlin PB, Whisstock JC, Cell Rep. 2012 Mar 29;1(3):185-90. doi: 10.1016/j.celrep.2012.02.012. Epub 2012, Mar 8. PMID:22832192

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk] Biological Unit Coordinates (4dur.pdb1.gz) 268 Kb Biological Unit Coordinates (4dur.pdb2.gz) 263 Kb LPC: Ligand-Protein Contacts for 4DUR CSU: Contacts of Structural Units for 4DUR Structure Factors (2057 Kb) Retrieve 4DUR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 4DUR from S2C, [Save to disk] Re-refined 4dur structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4DUR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 4DUR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 4DUR, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4dur_A] [4dur_B] [4dur] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 4DUR: [KR] [PAN_AP] [Tryp_SPc ] by SMART

Other resources with information on 4DUR

Community annotation for 4DUR at PDBWiki (http://pdbwiki.org)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

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