4DUR date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand ACT, BCT, CL, GAL, K, NAG, SIA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe X-ray crystal structure of full-length human plasminogen., Law RH, Caradoc-Davies T, Cowieson N, Horvath AJ, Quek AJ, Encarnacao JA, Steer D, Cowan A, Zhang Q, Lu BG, Pike RN, Smith AI, Coughlin PB, Whisstock JC, Cell Rep. 2012 Mar 29;1(3):185-90. doi: 10.1016/j.celrep.2012.02.012. Epub 2012, Mar 8. PMID:22832192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (533 Kb) [Save to disk]
  • Biological Unit Coordinates (4dur.pdb1.gz) 268 Kb
  • Biological Unit Coordinates (4dur.pdb2.gz) 263 Kb
  • LPC: Ligand-Protein Contacts for 4DUR
  • CSU: Contacts of Structural Units for 4DUR
  • Structure Factors (2057 Kb)
  • Retrieve 4DUR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DUR from S2C, [Save to disk]
  • Re-refined 4dur structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DUR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dur] [4dur_A] [4dur_B]
  • SWISS-PROT database:
  • Domains found in 4DUR: [KR] [PAN_AP] [Tryp_SPc ] by SMART

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