4DUU The X-ray Crystal Structure of Full-Length type I Human Plasminogen date
authors Law, R.H.P., Caradoc-Davies, T., Whisstock, J.C.
compound source
symmetry
R_factor
R_Free 0.3117
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 5.20
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe X-ray crystal structure of full-length human plasminogen., Law RH, Caradoc-Davies T, Cowieson N, Horvath AJ, Quek AJ, Encarnacao JA, Steer D, Cowan A, Zhang Q, Lu BG, Pike RN, Smith AI, Coughlin PB, Whisstock JC, Cell Rep. 2012 Mar 29;1(3):185-90. doi: 10.1016/j.celrep.2012.02.012. Epub 2012, Mar 8. PMID:22832192
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (231 Kb) [Save to disk]
  • Biological Unit Coordinates (4duu.pdb1.gz) 225 Kb
  • CSU: Contacts of Structural Units for 4DUU
  • Structure Factors (94 Kb)
  • Retrieve 4DUU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DUU from S2C, [Save to disk]
  • Re-refined 4duu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4DUU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4DUU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DUU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4duu] [4duu_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 4DUU: [KR] [PAN_AP] [Tryp_SPc ] by SMART
  • Other resources with information on 4DUU
  • Community annotation for 4DUU at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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