4DW3 Crystal structure of the glycoprotein Erns from the pestivirus BVDV-1 in complex with 5'-CMP date 2012-02-24
authors Krey, T., Bontems, F., Vonrhein, C., Vaney, M.C., Bricogne, G., Ruemenapf, T., Rey, F.A.
compound source
symmetry
R_factor
R_Free 0.2211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.35
ligand BMA, C5P, MAN, NAG, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal Structure of the Pestivirus Envelope Glycoprotein E(rns) and Mechanistic Analysis of Its Ribonuclease Activity., Krey T, Bontems F, Vonrhein C, Vaney MC, Bricogne G, Rumenapf T, Rey FA, Structure. 2012 May 9;20(5):862-73. PMID:22579253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (69 Kb) [Save to disk]
  • Biological Unit Coordinates (4dw3.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (4dw3.pdb2.gz) 32 Kb
  • LPC: Ligand-Protein Contacts for 4DW3
  • CSU: Contacts of Structural Units for 4DW3
  • Structure Factors (254 Kb)
  • Retrieve 4DW3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4DW3 from S2C, [Save to disk]
  • Re-refined 4dw3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4DW3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4DW3
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4DW3, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4dw3] [4dw3_B] [4dw3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4DW3
  • Community annotation for 4DW3 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science