4E06 Anophelin from the malaria vector inhibits thrombin through a novel reverse-binding mechanism date 2012-03-02
authors Figueiredo, A.C., Sanctis, D.de., Gutierrez-Gallego, R., Cereija, T.B., Macedo-Ribeiro, S., Fuentes-Prior, P., Pereira, P.J.B.
compound source
symmetry
R_factor
R_Free 0.2079
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.20
ligand NA, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
H


L


Primary referenceUnique thrombin inhibition mechanism by anophelin, an anticoagulant from the malaria vector., Figueiredo AC, de Sanctis D, Gutierrez-Gallego R, Cereija TB, Macedo-Ribeiro S, Fuentes-Prior P, Pereira PJ, Proc Natl Acad Sci U S A. 2012 Dec 26;109(52):E3649-58. doi:, 10.1073/pnas.1211614109. Epub 2012 Dec 5. PMID:23223529
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4e06.pdb1.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 4E06
  • CSU: Contacts of Structural Units for 4E06
  • Structure Factors (447 Kb)
  • Retrieve 4E06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E06 from S2C, [Save to disk]
  • Re-refined 4e06 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E06
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E06, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e06_H] [4e06_L] [4e06] [4e06_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E06: [Tryp_SPc ] by SMART
    • Other resources with information on 4E06
  • Community annotation for 4E06 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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