4E12 Substrate-directed dual catalysis of dicarbonyl compounds by diketoreductase date
authors Lu, M., White, M.A., Huang, Y., Wu, X., Liu, N., Cheng, X., Chen, Y.
compound source
symmetry
R_factor
R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.93
ligand 1PE, GOL, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDual catalysis mode for the dicarbonyl reduction catalyzed by diketoreductase., Lu M, Huang Y, White MA, Wu X, Liu N, Cheng X, Chen Y, Chem Commun (Camb). 2012 Oct 24;48(92):11352-4. doi: 10.1039/c2cc36334h. PMID:23073461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (4e12.pdb1.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 4E12
  • CSU: Contacts of Structural Units for 4E12
  • Structure Factors (276 Kb)
  • Retrieve 4E12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E12 from S2C, [Save to disk]
  • Re-refined 4e12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4E12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4E12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E12, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e12_A] [4e12]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4E12
  • Community annotation for 4E12 at PDBWiki (http://pdbwiki.org)
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