4E3S RB69 DNA Polymerase Ternary Complex with dQTP Opposite dT date 2012-03-10
authors Xia, S., Wang, J., Konigsberg, W.H.
compound source
symmetry
R_factor
R_Free 0.21855
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.04
ligand CA, DOC, QTP enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • DNA-directed DNA polymerase ...
  • nuclease activity
  • exonuclease activity
  • 3'-5' exonuclease activity


  • Primary referenceProbing Minor Groove Hydrogen Bonding Interactions between RB69 DNA Polymerase and DNA., Xia S, Christian TD, Wang J, Konigsberg WH, Biochemistry. 2012 May 17. PMID:22571765
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (336 Kb) [Save to disk]
  • Biological Unit Coordinates (4e3s.pdb1.gz) 329 Kb
  • LPC: Ligand-Protein Contacts for 4E3S
  • CSU: Contacts of Structural Units for 4E3S
  • Structure Factors (1117 Kb)
  • Retrieve 4E3S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4E3S from S2C, [Save to disk]
  • Re-refined 4e3s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4E3S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4E3S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4E3S, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4e3s_A] [4e3s_P] [4e3s_T] [4e3s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4E3S: [POLBc ] by SMART
  • Other resources with information on 4E3S
  • Community annotation for 4E3S at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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