OCA Atlas for 4EBB

4EBB

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

MSE, NAG, ZN

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

Structures of Human DPP7 Reveal the Molecular Basis of Specific Inhibition and the Architectural Diversity of Proline-Specific Peptidases., Bezerra GA, Dobrovetsky E, Dong A, Seitova A, Crombett L, Shewchuk LM, Hassell AM, Sweitzer SM, Sweitzer TD, McDevitt PJ, Johanson KO, Kennedy-Wilson KM, Cossar D, Bochkarev A, Gruber K, Dhe-Paganon S, PLoS One. 2012;7(8):e43019. Epub 2012 Aug 29. PMID:22952628

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (300 Kb) [Save to disk]

Biological Unit Coordinates (4ebb.pdb1.gz) 150 Kb

Biological Unit Coordinates (4ebb.pdb2.gz) 146 Kb

Biological Unit Coordinates (4ebb.pdb3.gz) 294 Kb

Biological Unit Coordinates (4ebb.pdb4.gz) 294 Kb

LPC: Ligand-Protein Contacts for 4EBB

CSU: Contacts of Structural Units for 4EBB

Structure Factors (1093 Kb)

Retrieve 4EBB in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 4EBB from S2C, [Save to disk]

Re-refined 4ebb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 4EBB in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [4ebb] [4ebb_A] [4ebb_B]

SWISS-PROT database:

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