4EDF date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand UPG enzyme
Gene
Ontology
ChainFunctionProcessComponent
D, B, A, C


Primary referenceCofactor Binding Triggers a Molecular Switch To Allosterically Activate Human UDP-alpha-d-glucose 6-Dehydrogenase., Sennett NC, Kadirvelraj R, Wood ZA, Biochemistry. 2012 Nov 20;51(46):9364-74. doi: 10.1021/bi301067w. Epub 2012 Nov, 8. PMID:23106432
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (278 Kb) [Save to disk]
  • Biological Unit Coordinates (4edf.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (4edf.pdb2.gz) 138 Kb
  • LPC: Ligand-Protein Contacts for 4EDF
  • CSU: Contacts of Structural Units for 4EDF
  • Structure Factors (999 Kb)
  • Retrieve 4EDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDF from S2C, [Save to disk]
  • Re-refined 4edf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edf] [4edf_A] [4edf_B] [4edf_C] [4edf_D]
  • SWISS-PROT database:
  • Domain found in 4EDF: [UDPG_MGDP_dh_C ] by SMART

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