4EDX date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Gene
Ontology
ChainFunctionProcessComponent
V, W


Primary referenceGeneration of a high-fidelity antibody against nerve growth factor using library scanning mutagenesis and validation with structures of the initial and optimized Fab-antigen complexes., La Porte SL, Eigenbrot C, Ultsch M, Ho WH, Foletti D, Forgie A, Lindquist KC, Shelton DL, Pons J, MAbs. 2014 Jul-Aug;6(4):1059-68. PMID:24830649
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (345 Kb) [Save to disk]
  • Biological Unit Coordinates (4edx.pdb1.gz) 338 Kb
  • CSU: Contacts of Structural Units for 4EDX
  • Structure Factors (491 Kb)
  • Retrieve 4EDX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDX from S2C, [Save to disk]
  • Re-refined 4edx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edx] [4edx_A] [4edx_B] [4edx_H] [4edx_L] [4edx_V] [4edx_W]
  • SWISS-PROT database:
  • Domains found in 4EDX: [IG_like] [IGv] [NGF ] by SMART

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