4EDY date
authors
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
ligand 9PQ, DMS, GSH, MG BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceInvestigation of the binding pocket of human hematopoietic prostaglandin (PG) D2 synthase (hH-PGDS): A tale of two waters., Trujillo JI, Kiefer JR, Huang W, Day JE, Moon J, Jerome GM, Bono CP, Kornmeier CM, Williams ML, Kuhn C, Rennie GR, Wynn TA, Carron CP, Thorarensen A, Bioorg Med Chem Lett. 2012 Jun 1;22(11):3795-9. Epub 2012 Apr 13. PMID:22546671
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (4edy.pdb1.gz) 159 Kb
  • LPC: Ligand-Protein Contacts for 4EDY
  • CSU: Contacts of Structural Units for 4EDY
  • Structure Factors (565 Kb)
  • Retrieve 4EDY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EDY from S2C, [Save to disk]
  • Re-refined 4edy structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EDY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4edy] [4edy_A] [4edy_B]
  • SWISS-PROT database:

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