4EGZ Crystal Structure of AraR(DBD) in complex with operator ORR3 date 2012-04-02
authors Jain, D., Nair, D.T.
compound source
symmetry
R_factor
R_Free 0.2712
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.30
ligand ACT enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceSpacing between core recognition motifs determines relative orientation of AraR monomers on bipartite operators., Jain D, Nair DT, Nucleic Acids Res. 2013 Jan 1;41(1):639-47. doi: 10.1093/nar/gks962. Epub 2012, Oct 29. PMID:23109551
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk]
  • Biological Unit Coordinates (4egz.pdb1.gz) 97 Kb
  • LPC: Ligand-Protein Contacts for 4EGZ
  • CSU: Contacts of Structural Units for 4EGZ
  • Structure Factors (686 Kb)
  • Retrieve 4EGZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EGZ from S2C, [Save to disk]
  • Re-refined 4egz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4EGZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4EGZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EGZ, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4egz_T] [4egz_U] [4egz] [4egz_B] [4egz_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4EGZ: [HTH_GNTR ] by SMART
  • Other resources with information on 4EGZ
  • Community annotation for 4EGZ at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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