4ER0 Crystal Structure of human DOT1L in complex with inhibitor FED1 date
authors Wernimont, A.K., Tempel, W., Yu, W., Li, Y., Nguyen, K.T., Federation, A., Marineau, J., Qi, J., Vedadi, M., Bradner, J.E., Schapira, M., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brown, P.J., SGC, Structural.Genomics.Consortium.
compound source
symmetry
R_factor
R_Free 0.2718
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 2.50
ligand AW1, UNX BindingDB enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCatalytic site remodelling of the DOT1L methyltransferase by selective inhibitors., Yu W, Chory EJ, Wernimont AK, Tempel W, Scopton A, Federation A, Marineau JJ, Qi J, Barsyte-Lovejoy D, Yi J, Marcellus R, Iacob RE, Engen JR, Griffin C, Aman A, Wienholds E, Li F, Pineda J, Estiu G, Shatseva T, Hajian T, Al-Awar R, Dick JE, Vedadi M, Brown PJ, Arrowsmith CH, Bradner JE, Schapira M, Nat Commun. 2012;3:1288. doi: 10.1038/ncomms2304. PMID:23250418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (57 Kb) [Save to disk]
  • Biological Unit Coordinates (4er0.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 4ER0
  • CSU: Contacts of Structural Units for 4ER0
  • Structure Factors (520 Kb)
  • Retrieve 4ER0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4ER0 from S2C, [Save to disk]
  • Re-refined 4er0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 4ER0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 4ER0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4ER0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4er0_A] [4er0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 4ER0: [AT_hook ] by SMART
  • Other resources with information on 4ER0
  • Community annotation for 4ER0 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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