4EX6 Crystal structure of the alnumycin P phosphatase AlnB date 2012-04-30
authors Oja, T., Niiranen, L., Sandalova, T., Klika, K.D., Niemi, J., Mantsala, P., Schneider, G., Metsa-Ketela, M.
compound source
symmetry
R_factor
R_Free 0.15315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.25
ligand BO3, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural basis for C-ribosylation in the alnumycin A biosynthetic pathway., Oja T, Niiranen L, Sandalova T, Klika KD, Niemi J, Mantsala P, Schneider G, Metsa-Ketela M, Proc Natl Acad Sci U S A. 2013 Jan 7. PMID:23297194
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (4ex6.pdb1.gz) 79 Kb
  • LPC: Ligand-Protein Contacts for 4EX6
  • CSU: Contacts of Structural Units for 4EX6
  • Structure Factors (1615 Kb)
  • Retrieve 4EX6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 4EX6 from S2C, [Save to disk]
  • Re-refined 4ex6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 4EX6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 4EX6
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 4EX6, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [4ex6_A] [4ex6]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 4EX6
  • Community annotation for 4EX6 at PDBWiki (http://pdbwiki.org)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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